The pipeline requires the following software to run:
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@@ -108,11 +108,11 @@ The pipeline requires the following software to run:
- mamba = `1.4.1`
- pandas = `1.4.2`
The easiest method to install this software stack is to create a GEP conda environment with the provided `snakemakeEnvironment.yaml` (see ***Note***)
The easiest method to install this software stack is to create a RADseq preprocessing conda environment with the provided `snakemakeEnvironment.yaml` (see ***Note***)
From within the main workflow directory (`radseq-pre-processing-pipeline`) where the `Snakefile` is located (make sure your snakemake environment is activated), run with:
From within the main workflow directory (`radseq-preprocessing-pipeline`) where the `Snakefile` is located (make sure your snakemake environment is activated), run with: