Fixed bug in update_ids

src/robofish/io/app.py

@@ -350,8 +350,8 @@ def update_individual_ids(args=None):
                         assert n_fish == len(
                             f.entities
                         ), f"Number of fish in file {file} is not the same as in the previous file."
-
-                    if video is None:
+                    if "video" in f.attrs:
+                        if video is None and "video" in f.attrs:
                             video = f.attrs["video"]
                         else:
                             assert (

src/robofish/io/file.py

@@ -79,6 +79,7 @@ class File(h5py.File):
         calendar_time_points: Iterable = None,
         open_copy: bool = False,
         validate_poses_hash: bool = True,
+        calculate_data_on_close: bool = True,
     ):
         """Create a new RoboFish Track Format object.
 
@@ -147,6 +148,7 @@ class File(h5py.File):
 
         self.path = path
         self.validate_when_saving = validate_when_saving
+        self.calculate_data_on_close = calculate_data_on_close
 
         if open_copy:
             assert (
@@ -275,7 +277,7 @@ class File(h5py.File):
         super().__exit__(type, value, traceback)
 
     def close(self):
-        if self.mode != "r":
+        if self.mode != "r" and self.calculate_data_on_close:
             self.update_calculated_data()
         super().close()