speed - Evaluate the speed of the entities as histogram.
turn - Evaluate the turn angles of the entities as histogram.
orientation - Evaluate the orientations of the entities on a 2d grid.
relative_orientation - Evaluate the relative orientations of the entities as a histogram.
distance_to_wall - Evaluate the distances of the entities to the walls as a histogram.
tank_positions - Evaluate the positions of the entities as a heatmap.
trajectories - Evaluate the trajectories of the entities.
evaluate_positionVec - Evaluate the vectors pointing from the focal fish to the conspecifics as heatmap.
follow_iid - Evaluate the follow metric in respect to the inter individual distance (iid).
paths The paths to files or folders. Multiple paths can be given to compare experiments.
optional arguments:
-h, --help show this help message and exit
--names NAMES [NAMES ...]
Names, that should be used in the graphs instead of the pahts.
--save_path SAVE_PATH
Filename for saving resulting graphics.
```
</small>
## Trackviewer
```bash
robofish-trackviewer example.hdf5
```
The trackviewer is from a different repository. It was included in the install instructions.
<small>
```
usage: robofish-trackviewer [-h] [--draw-labels] [--draw-view-vectors] [--far-plane FAR_PLANE] [--view-of-agents field of perception number of bins] [--view-of-walls field of perception number of bins]
[--view-of-walls-matches]
[trackset_file]
View RoboFish tracks in a GUI.
positional arguments:
trackset_file Path to HDF5 file containing the tracks to view
optional arguments:
-h, --help show this help message and exit
--draw-labels Whether to draw labels inside the agents' outlines
--draw-view-vectors Whether to draw view vectors to the right of / below the trackfile
--far-plane FAR_PLANE
Maximum distance an agent can see
--view-of-agents field of perception number of bins
--view-of-walls field of perception number of bins
@@ -153,6 +153,7 @@ If you find bugs or get stuck somewhere, please text `Andi` on Mattermost or by
...
@@ -153,6 +153,7 @@ If you find bugs or get stuck somewhere, please text `Andi` on Mattermost or by
In the [Track Format Specification](https://git.imp.fu-berlin.de/bioroboticslab/robofish/track_format/uploads/f76d86e7a629ca38f472b8f23234dbb4/RoboFish_Track_Format_-_1.0.pdf) and in this package there are more possibilities, we don't describe explicitly here. If you want to use any of the following features, please ask Andi:
In the [Track Format Specification](https://git.imp.fu-berlin.de/bioroboticslab/robofish/track_format/uploads/f76d86e7a629ca38f472b8f23234dbb4/RoboFish_Track_Format_-_1.0.pdf) and in this package there are more possibilities, we don't describe explicitly here. If you want to use any of the following features, please ask Andi:
Built in robofish.io and not described:
Built in robofish.io and not described:
- Multiple sampling frequencies
- Multiple sampling frequencies
- Timestamps per timestep
- Timestamps per timestep
- Calendar points
- Calendar points
...
@@ -160,6 +161,7 @@ Built in robofish.io and not described:
...
@@ -160,6 +161,7 @@ Built in robofish.io and not described: