- Requires: WGS sequencing libraries (Pacbio HiFi or Illumina PE short-insert `.fastq`'s)
- Output: (`.meryl`) k-mer database
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- Requires: WGS sequencing libraries (Pacbio HiFi or Illumina PE short-insert `.fastq`'s)
- Output: (`.meryl`) k-mer database
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2.[Assembly **Evaluation**](#assembly-evaluation)
- Requires: (`.meryl`) k-mer databases and corresponding genome assemblies (`.fasta`'s) you wish to evaluate. As well as HiC Libraries as optional input.
- Output:
- Assembly Stats (L#, N#, Scaffold, contig, etc.)
- BUSCO results
- QV Score
- K-mer Completeness
- genomescope profile
- Pretext Map (optional)
-**PDF Report aggregating all of the above**
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- Requires: (`.meryl`) k-mer databases and corresponding genome assemblies (`.fasta`'s) you wish to evaluate. As well as HiC Libraries as optional input.