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Commit 8e75ceb6 authored by james94's avatar james94
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Update README.md

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1. [**Build** meryl k-mer databases](#build-meryl-k-mer-databases) 1. [**Build** meryl k-mer databases](#build-meryl-k-mer-databases)
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![](https://i.imgur.com/HK4ZMi2.png) ![](https://i.imgur.com/HK4ZMi2.png)
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- Requires: WGS sequencing libraries (Pacbio HiFi or Illumina PE short-insert `.fastq`'s) - Requires: WGS sequencing libraries (Pacbio HiFi or Illumina PE short-insert `.fastq`'s)
- Output: (`.meryl`) k-mer database - Output: (`.meryl`) k-mer database
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2. [Assembly **Evaluation**](#assembly-evaluation) 2. [Assembly **Evaluation**](#assembly-evaluation)
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![](https://i.imgur.com/8eLKPtK.png)
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- Requires: (`.meryl`) k-mer databases and corresponding genome assemblies (`.fasta`'s) you wish to evaluate. As well as HiC Libraries as optional input. - Requires: (`.meryl`) k-mer databases and corresponding genome assemblies (`.fasta`'s) you wish to evaluate. As well as HiC Libraries as optional input.
- Output: - Output:
- Assembly Stats (L#, N#, Scaffold, contig, etc.) - Assembly Stats (L#, N#, Scaffold, contig, etc.)
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- genomescope profile - genomescope profile
- Pretext Map (optional) - Pretext Map (optional)
- **PDF Report aggregating all of the above** - **PDF Report aggregating all of the above**
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![](https://i.imgur.com/hWMo4PF.png) ![](https://i.imgur.com/hWMo4PF.png)
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