- Jul 20, 2023
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aakan96 authored
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aakan96 authored
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aakan96 authored
- /01_Differential Expression Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /01_Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /01_Differential Expression Analysis/Limma/mRNA/GSE20347.R - /01_Differential Expression Analysis/Limma/mRNA/GSE29001.R - /01_Differential Expression Analysis/Limma/mRNA/GSE70409.R - /01_Differential Expression Analysis/Limma/miRNA/GSE43732.R - /01_Differential Expression Analysis/Limma/miRNA/GSE55857.R - /01_Differential Expression Analysis/Limma/miRNA/GSE6188.R - /01_Differential Expression Analysis/merging/.gitkeep - /03_Machine Learning/.gitkeep - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/mRNA_DS_preprocessed_training_data.csv - /05_Data Annotation/GO biological function.png - /05_Data Annotation/GO cellular component.png - /05_Data Annotation/GO molecular function.png - /05_Data Annotation/GO_enrichment.R - /05_Data Annotation/biomart_for_annotation.R - /05_Data Annotation/go.csv - /05_Data Annotation/mrna.csv - /06_Survival Analysis/.gitkeep - /06_Survival Analysis/document.pdf - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /01_Differential_Expression_Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE29001.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE20347.R - /01_Differential_Expression_Analysis/Limma/mRNA/GSE70409.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE6188.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE43732.R - /01_Differential_Expression_Analysis/Limma/miRNA/GSE55857.R - /01_Differential_Expression_Analysis/merging/.gitkeep - /03_Machine_Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/.gitkeep - /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /03_Machine_Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /03_Machine_Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine_Learning/mRNA_DS_preprocessed_training_data.csv - /05_Data_Annotation/GO cellular component.png - /05_Data_Annotation/go.csv - /05_Data_Annotation/GO biological function.png - /05_Data_Annotation/GO_enrichment.R - /05_Data_Annotation/GO molecular function.png - /05_Data_Annotation/biomart_for_annotation.R - /05_Data_Annotation/mrna.csv - /06_Survival_Analysis/.gitkeep - /06_Survival_Analysis/document.pdf
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aakan96 authored
- /Project_Pitch.pdf - /project_workflow.PNG - /00_Project_Pitch.pdf - /00_project_workflow.PNG
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aakan96 authored
- /Differential Expression Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /Differential Expression Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /Differential Expression Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /Differential Expression Analysis/Limma/mRNA/GSE20347.R - /Differential Expression Analysis/Limma/mRNA/GSE29001.R - /Differential Expression Analysis/Limma/mRNA/GSE70409.R - /Differential Expression Analysis/Limma/miRNA/GSE43732.R - /Differential Expression Analysis/Limma/miRNA/GSE55857.R - /Differential Expression Analysis/Limma/miRNA/GSE6188.R - /Differential Expression Analysis/merging/.gitkeep - /MultiMIR/multimir_results_final.xlsx - /Data Annotation/GO biological function.png - /Data Annotation/GO cellular component.png - /Data Annotation/GO molecular function.png - /Data Annotation/GO_enrichment.R - /Data Annotation/biomart_for_annotation.R - /Data Annotation/go.csv - /Data Annotation/mrna.csv - /Machine Learning/.gitkeep - /Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /Machine Learning/mRNA_DS_preprocessed_training_data.csv - /Cytoscape/cytoscape.xlsx - /Cytoscape/extract_mrna_names_from_mirna.R - /Cytoscape/miRNAmRNA.xlsx - /Cytoscape/multimir_results.xlsx - /Cytoscape/new.png - /Survival Analysis/.gitkeep - /Survival Analysis/document.pdf - /01_Differential Expression Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /01_Differential Expression Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /01_Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /01_Differential Expression Analysis/Limma/mRNA/GSE29001.R - /01_Differential Expression Analysis/Limma/mRNA/GSE70409.R - /01_Differential Expression Analysis/Limma/mRNA/GSE20347.R - /01_Differential Expression Analysis/Limma/miRNA/GSE55857.R - /01_Differential Expression Analysis/Limma/miRNA/GSE6188.R - /01_Differential Expression Analysis/Limma/miRNA/GSE43732.R - /01_Differential Expression Analysis/merging/.gitkeep - /02_MultiMIR/multimir_results_final.xlsx - /05_Data Annotation/GO biological function.png - /05_Data Annotation/biomart_for_annotation.R - /05_Data Annotation/GO cellular component.png - /05_Data Annotation/go.csv - /05_Data Annotation/GO molecular function.png - /05_Data Annotation/GO_enrichment.R - /05_Data Annotation/mrna.csv - /03_Machine Learning/.gitkeep - /03_Machine Learning/mRNA_DS_preprocessed_training_data.csv - /03_Machine Learning/DS_miRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_svm_F.ipynb - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_svm_final-F.ipynb - /03_Machine Learning/DS_mRNA_limma_dataset_xgb_final-F.ipynb - /03_Machine Learning/DS_mRNA_TCGA_limma_dataset_xgb_final-F.ipynb - /04_Cytoscape/extract_mrna_names_from_mirna.R - /04_Cytoscape/miRNAmRNA.xlsx - /04_Cytoscape/cytoscape.xlsx - /04_Cytoscape/new.png - /04_Cytoscape/multimir_results.xlsx - /06_Survival Analysis/.gitkeep - /06_Survival Analysis/document.pdf
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- Jul 18, 2023
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yunusek77 authored
- /Cytoscape/.gitkeep - /project.PNG - /Cytoscape/cytoscape.xlsx - /Cytoscape/extract_mrna_names_from_mirna.R - /Cytoscape/miRNAmRNA.xlsx - /Cytoscape/new.png - /Cytoscape/multimir_results.xlsx - /project_workflow.PNG
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- Jul 17, 2023
- Jul 14, 2023
- Jul 13, 2023
- Jul 12, 2023
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yunusek77 authored
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yunusek77 authored
- /Data Annotation/GO cellular component.png - /Data Annotation/GO biological function.png - /Data Annotation/GO molecular function.png - /Data Annotation/biomart_for_annotation.R - /Data Annotation/GO_enrichment.R - /Data Annotation/mrna.csv
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yunusek77 authored
- /Data Annotation/GO_enrichment/.gitkeep - /Data Annotation/GO_enrichment/GO biological function.png - /Data Annotation/GO_enrichment/GO cellular component.png - /Data Annotation/GO_enrichment/GO molecular function.png - /Data Annotation/GO_enrichment/GO_enrichment.R - /Data Annotation/GO_enrichment/biomart_for_annotation.R - /Data Annotation/GO_enrichment/mrna.csv
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yunusek77 authored
- /Data Annotation/GO_enrichment/GO_molecular_function.png - /Data Annotation/.gitkeep - /Data Annotation/GO_enrichment/GO_cellular_component.png - /Data Annotation/GO_enrichment/GO_biological_function.png - /Data Annotation/GO_enrichment/biomart_for_annotation.R - /Data Annotation/GO_enrichment/GO_enrichment.R - /Data Annotation/GO_enrichment/GO molecular function.png - /Data Annotation/GO_enrichment/GO biological function.png - /Data Annotation/GO_enrichment/GO cellular component.png - /Data Annotation/GO_enrichment/mrna.csv
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aakan96 authored
- /Differential Expression Anlaysis/Deseq2/mRNA/GSE20347 mRNA.R - /Differential Expression Anlaysis/Deseq2/mRNA/GSE29001 mRNA.R - /Differential Expression Anlaysis/Deseq2/mRNA/GSE70409 mRNA.R - /Differential Expression Anlaysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /Differential Expression Anlaysis/Limma/mRNA/GSE20347.R - /Differential Expression Anlaysis/Limma/mRNA/GSE29001.R - /Differential Expression Anlaysis/Limma/mRNA/GSE70409.R - /Differential Expression Anlaysis/Limma/miRNA/GSE43732.R - /Differential Expression Anlaysis/Limma/miRNA/GSE55857.R - /Differential Expression Anlaysis/Limma/miRNA/GSE6188.R - /Differential Expression Anlaysis/merging/.gitkeep - /Differential Expression Analysis/Deseq2/mRNA/GSE29001 mRNA.R - /Differential Expression Analysis/Deseq2/mRNA/GSE20347 mRNA.R - /Differential Expression Analysis/Deseq2/mRNA/GSE70409 mRNA.R - /Differential Expression Analysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /Differential Expression Analysis/Limma/mRNA/GSE20347.R - /Differential Expression Analysis/Limma/mRNA/GSE29001.R - /Differential Expression Analysis/Limma/mRNA/GSE70409.R - /Differential Expression Analysis/Limma/miRNA/GSE55857.R - /Differential Expression Analysis/Limma/miRNA/GSE6188.R - /Differential Expression Analysis/Limma/miRNA/GSE43732.R - /Differential Expression Analysis/merging/.gitkeep
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aakan96 authored
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aakan96 authored
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- Jul 11, 2023
- Jul 09, 2023
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yunusek77 authored
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yunusek77 authored
- /Data_Annotation/.gitkeep - /Data_Annotation/DAVID/.gitkeep - /Data_Annotation/GO_enrichment/.gitkeep - /Data_Annotation/GO_enrichment/GO_biological_function.png - /Data_Annotation/GO_enrichment/GO_cellular_component.png - /Data_Annotation/GO_enrichment/GO_enrichment.R - /Data_Annotation/GO_enrichment/GO_molecular_function.png - /Data_Annotation/GO_enrichment/biomart_for_annotation.R - /Data Annotation/DAVID/.gitkeep - /Data Annotation/GO_enrichment/GO_cellular_component.png - /Data Annotation/GO_enrichment/GO_biological_function.png - /Data Annotation/GO_enrichment/GO_enrichment.R - /Data Annotation/GO_enrichment/.gitkeep - /Data Annotation/GO_enrichment/GO_molecular_function.png - /Data Annotation/GO_enrichment/biomart_for_annotation.R - /Data Annotation/.gitkeep
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yunusek77 authored
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yunusek77 authored
- /DGE/Deseq2/mRNA/GSE20347 mRNA.R - /DGE/Deseq2/mRNA/GSE29001 mRNA.R - /DGE/Deseq2/mRNA/GSE70409 mRNA.R - /DGE/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /DGE/Limma/mRNA/GSE20347.R - /DGE/Limma/mRNA/GSE29001.R - /DGE/Limma/mRNA/GSE70409.R - /DGE/Limma/miRNA/GSE43732.R - /DGE/Limma/miRNA/GSE55857.R - /DGE/Limma/miRNA/GSE6188.R - /Differential Expression Anlaysis/Deseq2/mRNA/GSE29001 mRNA.R - /Differential Expression Anlaysis/Deseq2/mRNA/GSE70409 mRNA.R - /Differential Expression Anlaysis/Deseq2/mRNA/GSE20347 mRNA.R - /Differential Expression Anlaysis/Deseq2/miRNA/GSE43732_miRNA_Multimir.R - /Differential Expression Anlaysis/Limma/mRNA/GSE20347.R - /Differential Expression Anlaysis/Limma/mRNA/GSE29001.R - /Differential Expression Anlaysis/Limma/mRNA/GSE70409.R - /Differential Expression Anlaysis/Limma/miRNA/GSE43732.R - /Differential Expression Anlaysis/Limma/miRNA/GSE55857.R - /Differential Expression Anlaysis/Limma/miRNA/GSE6188.R
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yunusek77 authored
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yunusek77 authored
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