example sample sheets

configuration/exampleSampleSheets/build_hifi_example.tsv

+sample   	hifi_reads							meryl_kmer_size	 	trimSMRTbell		fastQC
+ilLasFlex1.1	/srv/public/users/james94/data/ilLasFlex1.1/ERR6565937.fastq	21			True			True
+ilVanAtal1.2	/srv/public/users/james94/data/ilVanAtal1.2/ERR6608650.fastq	21			False			True
+ilCyaSemi1.1	/srv/public/users/james94/data/ilCyaSemi1.1/ERR6560795.fastq	21			False			True
+idScaPyra1.1	/srv/public/users/james94/data/idScaPyra1.1/ERR7057609.fastq	21			True			True
+idScaPyra1.1	/srv/public/users/james94/data/idScaPyra1.1/ERR7057610.fastq	21			True			True

configuration/exampleSampleSheets/build_illumina_example.tsv

+sample   	Library_R1                                              			Library_R2     									meryl_kmer_size	 	trim10X		trimAdapters	fastQC
+ilVanAtal1.2	/srv/public/users/james94/data/ilVanAtal1.2/30996_8_1_R1.trimmed.fq		/srv/public/users/james94/data/ilVanAtal1.2/30996_8_1_R2.trimmed.fq		21			False		False		True
+ilVanAtal1.2	/srv/public/users/james94/data/ilVanAtal1.2/30996_8_3_R1.trimmed.fq		/srv/public/users/james94/data/ilVanAtal1.2/30996_8_3_R2.trimmed.fq		21			False		False		True
+ilLasFlex1.1	/srv/public/users/james94/data/ilLasFlex1.1/ERR6002656_1.fastq.gz		/srv/public/users/james94/data/ilLasFlex1.1/ERR6002656_2.fastq.gz		21			True		True		True
+ilLasFlex1.1	/srv/public/users/james94/data/ilLasFlex1.1/ERR6003042_1.fastq			/srv/public/users/james94/data/ilLasFlex1.1/ERR6003042_2.fastq			21			True		True		True
+ilCyaSemi1.1	/srv/public/users/james94/data/ilCyaSemi1.1/ERR6002620_1.fastq.gz		/srv/public/users/james94/data/ilCyaSemi1.1/ERR6002620_2.fastq.gz		21			True		True		True
+ilCyaSemi1.1	/srv/public/users/james94/data/ilCyaSemi1.1/ERR6002621_1.fastq.gz		/srv/public/users/james94/data/ilCyaSemi1.1/ERR6002621_2.fastq.gz		21			True		True		True

configuration/exampleSampleSheets/runEval_example.tsv

+ID				PRI_asm											ALT_asm											merylDB				merylDB_kmer 	genomeSize
+ilVanAtal1.2_HifiDB	/srv/public/users/james94/ilVanAtal1.2/GCA_905147765.2_ilVanAtal1.2_genomic.fna.gz		None	/srv/public/users/james94/ilVanAtal1.2/complete_hifi_ilVanAtal1.2_dB.smrtTrimmed.21.meryl				21
+ilLasFlex1.1_IllumDB	/srv/public/users/james94/ilLasFlex1.1/GCA_905147015.1_ilLasFlex1.1_genomic.fna			None	/srv/public/users/james94/ilLasFlex1.1/complete_Illumina_ilLasFlex1.1_dB.10xTrimmed.AdaptTrimmed.21.meryl		21
+ilCyaSemi1.1_HifiDB	/srv/public/users/james94/ilCyaSemi1.1/GCA_905187585.1_ilCyaSemi1.1_genomic.fna.gz		None	/srv/public/users/james94/ilCyaSemi1.1/complete_hifi_ilCyaSemi1.1_dB.smrtTrimmed.21.meryl				21