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Commit 1b1c4845 authored by james94's avatar james94
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example sample sheets

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sample hifi_reads meryl_kmer_size trimSMRTbell fastQC
ilLasFlex1.1 /srv/public/users/james94/data/ilLasFlex1.1/ERR6565937.fastq 21 True True
ilVanAtal1.2 /srv/public/users/james94/data/ilVanAtal1.2/ERR6608650.fastq 21 False True
ilCyaSemi1.1 /srv/public/users/james94/data/ilCyaSemi1.1/ERR6560795.fastq 21 False True
idScaPyra1.1 /srv/public/users/james94/data/idScaPyra1.1/ERR7057609.fastq 21 True True
idScaPyra1.1 /srv/public/users/james94/data/idScaPyra1.1/ERR7057610.fastq 21 True True
sample Library_R1 Library_R2 meryl_kmer_size trim10X trimAdapters fastQC
ilVanAtal1.2 /srv/public/users/james94/data/ilVanAtal1.2/30996_8_1_R1.trimmed.fq /srv/public/users/james94/data/ilVanAtal1.2/30996_8_1_R2.trimmed.fq 21 False False True
ilVanAtal1.2 /srv/public/users/james94/data/ilVanAtal1.2/30996_8_3_R1.trimmed.fq /srv/public/users/james94/data/ilVanAtal1.2/30996_8_3_R2.trimmed.fq 21 False False True
ilLasFlex1.1 /srv/public/users/james94/data/ilLasFlex1.1/ERR6002656_1.fastq.gz /srv/public/users/james94/data/ilLasFlex1.1/ERR6002656_2.fastq.gz 21 True True True
ilLasFlex1.1 /srv/public/users/james94/data/ilLasFlex1.1/ERR6003042_1.fastq /srv/public/users/james94/data/ilLasFlex1.1/ERR6003042_2.fastq 21 True True True
ilCyaSemi1.1 /srv/public/users/james94/data/ilCyaSemi1.1/ERR6002620_1.fastq.gz /srv/public/users/james94/data/ilCyaSemi1.1/ERR6002620_2.fastq.gz 21 True True True
ilCyaSemi1.1 /srv/public/users/james94/data/ilCyaSemi1.1/ERR6002621_1.fastq.gz /srv/public/users/james94/data/ilCyaSemi1.1/ERR6002621_2.fastq.gz 21 True True True
ID PRI_asm ALT_asm merylDB merylDB_kmer genomeSize
ilVanAtal1.2_HifiDB /srv/public/users/james94/ilVanAtal1.2/GCA_905147765.2_ilVanAtal1.2_genomic.fna.gz None /srv/public/users/james94/ilVanAtal1.2/complete_hifi_ilVanAtal1.2_dB.smrtTrimmed.21.meryl 21
ilLasFlex1.1_IllumDB /srv/public/users/james94/ilLasFlex1.1/GCA_905147015.1_ilLasFlex1.1_genomic.fna None /srv/public/users/james94/ilLasFlex1.1/complete_Illumina_ilLasFlex1.1_dB.10xTrimmed.AdaptTrimmed.21.meryl 21
ilCyaSemi1.1_HifiDB /srv/public/users/james94/ilCyaSemi1.1/GCA_905187585.1_ilCyaSemi1.1_genomic.fna.gz None /srv/public/users/james94/ilCyaSemi1.1/complete_hifi_ilCyaSemi1.1_dB.smrtTrimmed.21.meryl 21
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