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Commit efbfdbc0 authored by james94's avatar james94
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dictionary misnamed

parent c11cf23c
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...@@ -111,7 +111,7 @@ rule fastqc_hifi: ...@@ -111,7 +111,7 @@ rule fastqc_hifi:
rule multiqc_hifi: rule multiqc_hifi:
input: input:
lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/{readCounter}.{smrtornot}_fastqc.html"), sample=wildcards.sample, readCounter=d[wildcards.sample], smrtornot=testDict[wildcards.sample][1]) lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/{readCounter}.{smrtornot}_fastqc.html"), sample=wildcards.sample, readCounter=dictReadCounter[wildcards.sample], smrtornot=dictSamples[wildcards.sample][1])
params: params:
folder2qc=os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/"), folder2qc=os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/05_multiqc/"),
filename="{sample}.{smrtornot}.multiqcReport.html" filename="{sample}.{smrtornot}.multiqcReport.html"
...@@ -150,7 +150,7 @@ rule meryl_hifi_count: ...@@ -150,7 +150,7 @@ rule meryl_hifi_count:
rule meryl_hifi_build: rule meryl_hifi_build:
input: input:
lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/03_merylDb/{readCounter}_hifi_dB.{smrtornot}.{kmer}.meryl/"), sample=wildcards.sample, readCounter=d[wildcards.sample], kmer=testDict[wildcards.sample][0], smrtornot=testDict[wildcards.sample][1]) lambda wildcards: expand(os.path.join(config['Results'],"0_buildDatabases/{sample}/hifiReads/03_merylDb/{readCounter}_hifi_dB.{smrtornot}.{kmer}.meryl/"), sample=wildcards.sample, readCounter=dictReadCounter[wildcards.sample], kmer=dictSamples[wildcards.sample][0], smrtornot=dictSamples[wildcards.sample][1])
params: params:
kmer = "{kmer}" kmer = "{kmer}"
threads: threads:
......
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